22 μm) before use. Each well of a 96-well microplate was filled with 100 μL of the amoebic trophozoites suspension (containing Epigenetic Reader Domain inhibitor 5 × 104 cells). The amoebae (A. castellanii or A. culbertsoni) were allowed to adhere to the wells for 2 h at 27 °C. PAS (100 μL) containing 5 × 102 bacteria (multiplicity of infection of 0.01) were added in the wells and incubation was carried out during 24, 48 and 72 h at 27 °C. Controls were performed by incubating bacteria in PAS without amoebae. The same experiments were carried out in filtered tap water. After incubation (24, 48 or 72 h), the co-cultures were passed five times through a 27-gauge needle

to lyse the amoebae. Experiments had previously been performed with A. baumanii alone to ensure that this passage did not affect the viability of the RO4929097 mouse bacteria. Serial dilutions

of the lysates were plated on Mueller–Hinton medium and incubated at 37 °C for 48 h to evaluate CFU. After 24, 48 and 72 h of incubation, a microscopical examination of the culture using trypan blue staining was also carried out in order to determine the viability of amoebae. All the experiments were reproduced three times, each time in duplicate. Amoebae were infected with A. baumanii Ab1 strain as described above, but the experimentations were performed in flasks, and after 24 h of incubation, the co-cultures were transferred into encystment medium as described previously (Bouyer et al., 2007). This medium was chosen Bay 11-7085 so as to allow cyst formation and to mimic conditions of poor nutrient availability. The CFU of A. baumanii were then numbered after 3, 5, 7, 11, 30 and 60 days of incubation at 27 °C. In addition, samples of suspensions (with Ab1 only) were examined after 2 h, 1, 3, 11 and 60 days by electron microscopy. Trophozoites (5 × 105 mL−1) of each strain were incubated at 27 °C for 72 h in PAS or filtered water. The amoebae were then pelleted by gentle centrifugation

(1000 g–10 min) in order to prevent lysis, and each strain of A. baumanii (5 × 103 mL−1) was incubated at 27 °C for 48 h in the resultant filtered (0.45 μm) supernatant. After incubation, the growth potential of the bacteria was determined by plating serial dilutions of the suspension on Mueller–Hinton medium to determine CFU counts. Controls were performed with A. baumanii incubated in PAS or in filtered water without supernatant. The potential internalization of bacteria was investigated by electron microscopy of infected amoebae. After 2 h, 1, 3, 11 and 60 days, a sample of the co-cultivation in PAS or in encystment medium (A. castellanii or A. culbertsoni with the strain A. baumanii Ab1) was incubated for 1 h in phosphate buffer 0.1 M, containing 4% glutaraldehyde at 4 °C. Cells were washed four times in phosphate-buffered saline and post-fixed with 1% OsO4 in phosphate buffer 0.1 M for 1 h at 4 °C. The sample was dehydrated in an acetone series and embedded in araldite resin.